tidyestimate: A Tidy Implementation of 'ESTIMATE'

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Version: 1.1.1
Depends: R (≥ 4.1.0)
Imports: glue, dplyr, stats, rlang, ggrepel, ggplot2
Suggests: rmarkdown, knitr
Published: 2023-08-21
DOI: 10.32614/CRAN.package.tidyestimate
Author: Kai Aragaki ORCID iD [aut, cre], Paul Roebuck [cph] (Copyright holder of ESTIMATE package), Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm), Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm), Hoon Kim [aut] (Author of original ESTIMATE algorithm), Roel Verhaak [aut] (Author of original ESTIMATE algorithm)
Maintainer: Kai Aragaki <aaragak1 at jhmi.edu>
BugReports: https://github.com/KaiAragaki/tidyestimate/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: see file COPYRIGHTS
URL: https://github.com/KaiAragaki/tidyestimate
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: tidyestimate results


Reference manual: tidyestimate.pdf
Vignettes: Using tidyestimate


Package source: tidyestimate_1.1.1.tar.gz
Windows binaries: r-devel: tidyestimate_1.1.1.zip, r-release: tidyestimate_1.1.1.zip, r-oldrel: tidyestimate_1.1.1.zip
macOS binaries: r-release (arm64): tidyestimate_1.1.1.tgz, r-oldrel (arm64): tidyestimate_1.1.1.tgz, r-release (x86_64): tidyestimate_1.1.1.tgz, r-oldrel (x86_64): tidyestimate_1.1.1.tgz
Old sources: tidyestimate archive


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