netchain is a R package for causal inference on collective outcomes under social network. Our paper proposed and justified a parsimonious parametrization for social network data generated from causal directed acyclic graph (DAG), approximating a particular family of graphical models known as chain graphs under some conditions.

We provide a function `simGibbs()`

to generate binary
outcomes, treatments, and confounders from chain graph model. A function
`chain.causal.multi()`

is to infer parameters in the
conditional log-linear models that feature hybrid graphical models of
undirected graphs and directed acyclic graphs (DAG). This function
generates counterfactual outcomes using Gibbs sampling given
`treatment`

assignment and the estimated parameters to derive
the probability associated with collective outcomes. We also provide a
function of `causal.influence()`

to identify the most
(causally) influential subjects in social network based on the their
causal effect on the collective outcomes.

- Version: 0.1.0
- Author : Elizabeth Ogburn (eogburn@jhu.edu), Ilya Shpitser (ilyas@jhu.edu), and Youjin Lee (ylee160@jhu.edu)
- Maintainer : Youjin Lee (ylee160@jhu.edu)
- Imports: Rcpp (>= 0.12.17), Matrix, gtools, stringr, stats, igraph, simcausal
- Linking to : Rcpp

You can download the package by:

```
install.packages("netchain")
# or you can directly download the development version from author's Github
install.packages("devtools")
library(devtools)
install_github("youjin1207/netchain")
```

Here is a R vignettes for guidance. Or you can access to vignettes via:

```
install_github("youjin1207/netchain", build_vignettes = TRUE)
vignette("chainapprox", package = "netchain")
```

```
library(netchain)
# set direct effect and two-way interaction effect on undirected graphs (weight.matrix)
weight.matrix = matrix(c(0.5, 1, 0, 1, 0.3, 0.5, 0, 0.5, -0.5), 3, 3)
simobs = simGibbs(n.unit = 3, n.gibbs = 10, n.sample = 10,
weight.matrix,
treat.matrix = 0.5*diag(3), cov.matrix= (-0.3)*diag(3) )
inputY = simobs$inputY
inputA = simobs$inputA
inputC = simobs$inputC
# define relational matrix (R.matrix)
R.matrix = ifelse(weight.matrix==0, 0, 1)
diag(R.matrix) = 0
# infer conditional log-linear model following chain graph models.
result = chain.causal.multi(targetoutcome = "mean", treatment = c(1,0,0), inputY, inputA, listC = inputC, R.matrix = R.matrix, E.matrix = diag(3), edgeinfo = list(rbind(c("Y", 1), c("C", 1)), rbind(c("Y", 2), c("C", 2)), rbind(c("Y", 3), c("C", 3))), n.obs = 1000, n.burn = 100)
print(result)
# measure influence for each node by evaluating average of collective outcomes under each treatment.
influence = causal.influence(targetoutcome = "mean", Avalues = c(1,0),
inputY, inputA, listC = inputC, R.matrix, E.matrix = diag(3),
edgeinfo = list(rbind(c("Y", 1), c("C", 1)), rbind(c("Y", 2), c("C", 2)), rbind(c("Y", 3), c("C", 3))), n.obs = 100, n.burn = 10)
print(influence)
```

Ogburn, E. L., Shpitser, I., & Lee, Y. (2018). Causal inference,
social networks, and chain graphs. *arXiv preprint
arXiv:1812.04990*.