mxnorm: Apply Normalization Methods to Multiplexed Images

Implements methods to normalize multiplexed imaging data, including statistical metrics and visualizations to quantify technical variation in this data type. Reference for methods listed here: Harris, C., Wrobel, J., & Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging Data. Journal of Open Source Software, 7(71), 4180, <doi:10.21105/joss.04180>.

Version: 1.0.3
Depends: R (≥ 3.5.0)
Imports: magrittr, dplyr, rlang, fda, stats, data.table, reticulate, caret, e1071, ggplot2, tidyr, uwot, lme4, stringr, KernSmooth, kSamples, psych, fossil, glue, methods
Suggests: knitr, janitor (≥ 2.1.0), testthat (≥ 3.0.0), rmarkdown, markdown, covr
Published: 2023-05-01
DOI: 10.32614/CRAN.package.mxnorm
Author: Coleman Harris ORCID iD [aut, cre]
Maintainer: Coleman Harris <coleman.r.harris at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: mxnorm results


Reference manual: mxnorm.pdf
Vignettes: mxnorm-vignette1


Package source: mxnorm_1.0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): mxnorm_1.0.3.tgz, r-oldrel (arm64): mxnorm_1.0.3.tgz, r-release (x86_64): mxnorm_1.0.3.tgz, r-oldrel (x86_64): mxnorm_1.0.3.tgz
Old sources: mxnorm archive


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