biogrowth: Modelling of Population Growth

Modelling of population growth under static and dynamic environmental conditions. Includes functions for model fitting and making prediction under isothermal and dynamic conditions. The methods (algorithms & models) are based on predictive microbiology (See Perez-Rodriguez and Valero (2012, ISBN:978-1-4614-5519-6)).

Version: 1.0.1
Depends: R (≥ 2.10)
Imports: deSolve (≥ 1.28), tibble (≥ 3.0.3), dplyr (≥ 0.8.5), FME (≥ 1.3.6), MASS (≥ 7.3), rlang (≥ 0.4.7), purrr (≥ 0.3.4), ggplot2 (≥ 3.3.2), cowplot (≥ 1.0.0), lamW (≥ 1.3.0), tidyr (≥ 1.0.2), formula.tools (≥ 1.7.1), lifecycle
Suggests: knitr, rmarkdown, tidyverse (≥ 1.3.0)
Published: 2022-12-02
Author: Alberto Garre ORCID iD [aut, cre], Jeroen Koomen [aut], Heidy den Besten [aut], Marcel Zwietering [aut]
Maintainer: Alberto Garre <garre.alberto at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: biogrowth results

Documentation:

Reference manual: biogrowth.pdf
Vignettes: Growth predictions in biogrowth
Fitting growth models in biogrowth
Including uncertainty in growth predictions in biogrowth
Comparing growth models
Modelling approach
Description of datasets
About the units of the growth rate (mu)
Advanced plotting options in biogrowth
Modelling constant environmental conditions using secondary models
Deprecated and superseded functions

Downloads:

Package source: biogrowth_1.0.1.tar.gz
Windows binaries: r-devel: biogrowth_1.0.1.zip, r-release: biogrowth_1.0.1.zip, r-oldrel: biogrowth_1.0.0-3.zip
macOS binaries: r-release (arm64): biogrowth_1.0.1.tgz, r-oldrel (arm64): biogrowth_1.0.1.tgz, r-release (x86_64): biogrowth_1.0.0-3.tgz, r-oldrel (x86_64): biogrowth_1.0.0-3.tgz
Old sources: biogrowth archive

Linking:

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