RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting

Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) <doi:10.1186/1471-2105-11-129>.

Version: 0.8.0
Depends: RRNA, stats, graphics, circlize
Published: 2023-01-12
Author: Zheng HeWei
Maintainer: Zheng HeWei <406649023 at qq.com>
License: GPL-2
NeedsCompilation: no
In views: Omics
CRAN checks: RNAsmc results


Reference manual: RNAsmc.pdf


Package source: RNAsmc_0.8.0.tar.gz
Windows binaries: r-prerel: RNAsmc_0.8.0.zip, r-release: RNAsmc_0.8.0.zip, r-oldrel: RNAsmc_0.8.0.zip
macOS binaries: r-prerel (arm64): RNAsmc_0.8.0.tgz, r-release (arm64): RNAsmc_0.8.0.tgz, r-oldrel (arm64): RNAsmc_0.8.0.tgz, r-prerel (x86_64): RNAsmc_0.8.0.tgz, r-release (x86_64): RNAsmc_0.8.0.tgz
Old sources: RNAsmc archive


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