Compositional: Compositional Data Analysis

Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions). The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include: a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519–534. c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430–444. d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47–57. e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243–261. <doi:10.1007/s00357-016-9207-5>. f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406–422. <doi:10.1080/00949655.2016.1216554>. g) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics, 39(3): 398–412. <doi:10.1134/S1995080218030198>. h) Alenazi A. (2019). Regression for compositional data with compositional data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219–238. <doi:10.6339/JDS.201901_17(1).0010>. i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2):249–277. <doi:10.1111/anzs.12289>. j) Alenazi A. (2021). Alenazi, A. (2021). A review of compositional data analysis and recent advances. Communications in Statistics-Theory and Methods (Accepted for publication). <doi:10.1080/03610926.2021.2014890>. k) Tsagris M. and Stewart C. (2022). A Review of Flexible Transformations for Modeling Compositional Data. In Advances and Innovations in Statistics and Data Science, pp. 225–234. <doi:10.1007/978-3-031-08329-7_10>. l) Tsagris M., Alenazi A. and Stewart C. (2022). Flexible non-parametric regression models for compositional response data with zeros. <arXiv:2002.05137>.

Version: 6.0
Depends: R (≥ 4.0)
Imports: codalm, Directional, doParallel, emplik, energy, FlexDir, foreach, glmnet, graphics, grDevices, MASS, mda, mixture, NlcOptim, nnet, parallel, pchc, RANN, Rfast, Rfast2, sn, stats
Published: 2022-11-12
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut], Abdulaziz Alenazi [ctb], Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris at uoc.gr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
In views: Distributions
CRAN checks: Compositional results

Documentation:

Reference manual: Compositional.pdf

Downloads:

Package source: Compositional_6.0.tar.gz
Windows binaries: r-devel: Compositional_6.0.zip, r-release: Compositional_6.0.zip, r-oldrel: Compositional_6.0.zip
macOS binaries: r-release (arm64): Compositional_6.0.tgz, r-oldrel (arm64): Compositional_6.0.tgz, r-release (x86_64): Compositional_6.0.tgz, r-oldrel (x86_64): Compositional_6.0.tgz
Old sources: Compositional archive

Reverse dependencies:

Reverse imports: QFASA

Linking:

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