viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly' and 'polyqtlR' packages.

Version: 0.1.1
Depends: R (≥ 4.0)
Imports: shiny (≥ 1.6.0), shinyjs, shinythemes, shinyWidgets, shinydashboard, config (≥ 0.3.1), golem (≥ 0.3.1), JBrowseR, dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind, reshape2, markdown, stats, rlang
Suggests: testthat (≥ 3.0.0)
Published: 2022-01-03
Author: Cristiane Taniguti [aut, cre], Gabriel Gesteira [aut], Jeekin Lau [ctb], Guilherme Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]
Maintainer: Cristiane Taniguti <chtaniguti at tamu.edu>
BugReports: https://github.com/mmollina/viewpoly/issues
License: GPL-3
URL: https://github.com/mmollina/viewpoly
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: viewpoly results

Documentation:

Reference manual: viewpoly.pdf

Downloads:

Package source: viewpoly_0.1.1.tar.gz
Windows binaries: r-devel: viewpoly_0.1.1.zip, r-release: viewpoly_0.1.1.zip, r-oldrel: viewpoly_0.1.1.zip
macOS binaries: r-release (arm64): viewpoly_0.1.1.tgz, r-oldrel (arm64): viewpoly_0.1.1.tgz, r-release (x86_64): viewpoly_0.1.1.tgz, r-oldrel (x86_64): viewpoly_0.1.1.tgz
Old sources: viewpoly archive

Linking:

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