palmid: RdRP Analysis Suite

R Analysis suite for viral RNA dependent RNA polymerase (RdRP). Statistical and meta-data analysis of 'palmscan' output and 'palmDB'/ 'DIAMOND' alignment files. Cross reference an input RNA virus against 145,000 RdRP identified in the Serratus project.

Version: 0.0.3
Depends: R (≥ 3.5.0), dplyr, ggplot2 (≥ 3.3.3)
Imports: dbplyr, downloadthis, DBI, DT, ggplotify, ggwordcloud, ggExtra, grDevices, gridExtra (≥ 2.3), htmltools, htmlwidgets, leaflet, methods, plotly, rmarkdown, RPostgreSQL, scales, stats, utils, viridisLite
Suggests: sf, rnaturalearth, rnaturalearthdata
Published: 2021-10-15
Author: Artem Babaian [aut, cre]
Maintainer: Artem Babaian <artem at>
License: AGPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: palmid results


Reference manual: palmid.pdf


Package source: palmid_0.0.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): palmid_0.0.3.tgz, r-release (x86_64): palmid_0.0.3.tgz, r-oldrel: palmid_0.0.3.tgz


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