CRAN Package Check Results for Package pedtools

Last updated on 2022-01-26 06:50:23 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 11.38 111.94 123.32 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 10.30 86.20 96.50 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 151.64 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 141.52 OK
r-devel-windows-x86_64-new-UL 1.1.0 158.00 138.00 296.00 OK
r-devel-windows-x86_64-new-TK 1.1.0 OK
r-patched-linux-x86_64 1.1.0 11.36 105.52 116.88 OK
r-release-linux-x86_64 1.1.0 11.15 105.70 116.85 OK
r-release-macos-arm64 1.1.0 OK
r-release-macos-x86_64 1.1.0 OK
r-release-windows-ix86+x86_64 1.1.0 25.00 127.00 152.00 OK
r-oldrel-macos-x86_64 1.1.0 ERROR
r-oldrel-windows-ix86+x86_64 1.1.0 24.00 116.00 140.00 ERROR

Check Details

Version: 1.1.0
Check: for unstated dependencies in examples
Result: WARN
    Warning: parse error in file 'lines':
    9: unexpected '>'
    504: # Alternative syntax, adding one marker at a time
    505: x2 = x |>
     ^
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘pedtools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: marker_attach
    > ### Title: Attach markers to pedigrees
    > ### Aliases: marker_attach setMarkers addMarkers
    >
    > ### ** Examples
    >
    > x = singleton(1)
    > m1 = marker(x, `1` = "1/2")
    > m2 = marker(x, `1` = "a/b")
    >
    > # Attach to x
    > x1 = setMarkers(x, list(m1, m2))
    >
    > # Reversing the order of the markers
    > setMarkers(x, list(m2, m1))
     id fid mid sex <1> <2>
     1 * * 1 a/b 1/2
    >
    > # Alternative syntax, adding one marker at a time
    > x2 = x |> addMarker(`1` = "1/2") |> addMarker(`1` = "a/b")
    Error: unexpected '>' in "x2 = x |>"
    Execution halted
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2s/2s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(pedtools)
     >
     > test_check("pedtools")
     Error in parse(con, n = -1, srcfile = srcfile, encoding = "UTF-8") :
     test-marker-attach.R:49:53: unexpected '>'
     48: test_that("addMarkers() gives same result with and without alleleMarkers", {
     49: x = nuclearPed(fa="fa", mo="mo", children="boy") |>
     ^
     Calls: test_check ... doTryCatch -> lapply -> FUN -> source_file -> parse
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.1.0
Check: for unstated dependencies in examples
Result: WARN
    Warning: parse error in file 'lines':
    9: unexpected '>'
    505: # Alternative syntax, adding one marker at a time
    506: x2 = x |>
     ^
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: for unstated dependencies in ‘tests’
Result: WARN
    Warning: parse error in file 'testthat/test-marker-attach.R':
    49:53: unexpected '>'
    48: test_that("addMarkers() gives same result with and without alleleMarkers", {
    49: x = nuclearPed(fa="fa", mo="mo", children="boy") |>
     ^
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [4s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(pedtools)
     >
     > test_check("pedtools")
     Error in parse(con, n = -1, srcfile = srcfile, encoding = "UTF-8") :
     test-marker-attach.R:49:53: unexpected '>'
     48: test_that("addMarkers() gives same result with and without alleleMarkers", {
     49: x = nuclearPed(fa="fa", mo="mo", children="boy") |>
     ^
     Calls: test_check ... doTryCatch -> lapply -> FUN -> source_file -> parse
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64